PoplarV1, Main, Exploration, bibRecord, 001193

Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

Identifieur interne : 001193 ( Main/Exploration ); précédent : 001192; suivant : 001194

Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

Auteurs : Melissa Roach [Suède] ; Stéphanie Arrivault [Allemagne] ; Amir Mahboubi [Suède] ; Nicole Krohn [Allemagne] ; Ronan Sulpice [Allemagne, Irlande (pays)] ; Mark Stitt [Allemagne] ; Totte Niittyl [Suède]

Source :

Journal of experimental botany [ 1460-2431 ] ; 2017.

RBID : pubmed:28645173

Descripteurs français

KwdFr :
- Bois (croissance et développement), Bois (enzymologie), Cambium (croissance et développement), Cambium (enzymologie), Carbone (métabolisme), Phloème (croissance et développement), Phloème (enzymologie), Populus (enzymologie), Populus (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Transcription génétique (MeSH).
MESH :
- croissance et développement : Bois, Cambium, Phloème.
- enzymologie : Bois, Cambium, Phloème, Populus.
- génétique : Populus, Protéines végétales.
- métabolisme : Carbone, Protéines végétales.
- Régulation de l'expression des gènes végétaux, Transcription génétique.

English descriptors

KwdEn :
- Cambium (enzymology), Cambium (growth & development), Carbon (metabolism), Gene Expression Regulation, Plant (MeSH), Phloem (enzymology), Phloem (growth & development), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (enzymology), Populus (genetics), Transcription, Genetic (MeSH), Wood (enzymology), Wood (growth & development).
MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Carbon, Plant Proteins.
- enzymology : Cambium, Phloem, Populus, Wood.
- genetics : Populus.
- growth & development : Cambium, Phloem, Wood.
- Gene Expression Regulation, Plant, Transcription, Genetic.

Abstract

The contribution of transcriptional and post-transcriptional regulation to modifying carbon allocation to developing wood of trees is not well defined. To clarify the role of transcriptional regulation, the enzyme activity patterns of eight central primary metabolism enzymes across phloem, cambium, and developing wood of aspen (Populus tremula L.) were compared with transcript levels obtained by RNA sequencing of sequential stem sections from the same trees. Enzymes were selected on the basis of their importance in sugar metabolism and in linking primary metabolism to lignin biosynthesis. Existing enzyme assays were adapted to allow measurements from ~1 mm3 sections of dissected stem tissue. These experiments provided high spatial resolution of enzyme activity changes across different stages of wood development, and identified the gene transcripts probably responsible for these changes. In most cases, there was a clear positive relationship between transcripts and enzyme activity. During secondary cell wall formation, the increases in transcript levels and enzyme activities also matched with increased levels of glucose, fructose, hexose phosphates, and UDP-glucose, emphasizing an important role for transcriptional regulation in carbon allocation to developing aspen wood. These observations corroborate the efforts to increase carbon allocation to wood by engineering gene regulatory networks.

DOI: 10.1093/jxb/erx200
PubMed: 28645173
PubMed Central: PMC5853372

Affiliations:

Allemagne, Irlande (pays), Suède

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001272
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Le document en format XML

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<term>Cambium (growth & development)</term>
<term>Carbon (metabolism)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Phloem (enzymology)</term>
<term>Phloem (growth & development)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Transcription, Genetic (MeSH)</term>
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<term>Wood (growth & development)</term>
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<term>Bois (enzymologie)</term>
<term>Cambium (croissance et développement)</term>
<term>Cambium (enzymologie)</term>
<term>Carbone (métabolisme)</term>
<term>Phloème (croissance et développement)</term>
<term>Phloème (enzymologie)</term>
<term>Populus (enzymologie)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Transcription génétique (MeSH)</term>
</keywords>
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</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Carbon</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Bois</term>
<term>Cambium</term>
<term>Phloème</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Bois</term>
<term>Cambium</term>
<term>Phloème</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Cambium</term>
<term>Phloem</term>
<term>Populus</term>
<term>Wood</term>
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</keywords>
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<term>Protéines végétales</term>
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<term>Protéines végétales</term>
</keywords>
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<term>Transcription, Genetic</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Régulation de l'expression des gènes végétaux</term>
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<front><div type="abstract" xml:lang="en">The contribution of transcriptional and post-transcriptional regulation to modifying carbon allocation to developing wood of trees is not well defined. To clarify the role of transcriptional regulation, the enzyme activity patterns of eight central primary metabolism enzymes across phloem, cambium, and developing wood of aspen (Populus tremula L.) were compared with transcript levels obtained by RNA sequencing of sequential stem sections from the same trees. Enzymes were selected on the basis of their importance in sugar metabolism and in linking primary metabolism to lignin biosynthesis. Existing enzyme assays were adapted to allow measurements from ~1 mm3 sections of dissected stem tissue. These experiments provided high spatial resolution of enzyme activity changes across different stages of wood development, and identified the gene transcripts probably responsible for these changes. In most cases, there was a clear positive relationship between transcripts and enzyme activity. During secondary cell wall formation, the increases in transcript levels and enzyme activities also matched with increased levels of glucose, fructose, hexose phosphates, and UDP-glucose, emphasizing an important role for transcriptional regulation in carbon allocation to developing aspen wood. These observations corroborate the efforts to increase carbon allocation to wood by engineering gene regulatory networks.</div>
</front>
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<Abstract><AbstractText>The contribution of transcriptional and post-transcriptional regulation to modifying carbon allocation to developing wood of trees is not well defined. To clarify the role of transcriptional regulation, the enzyme activity patterns of eight central primary metabolism enzymes across phloem, cambium, and developing wood of aspen (Populus tremula L.) were compared with transcript levels obtained by RNA sequencing of sequential stem sections from the same trees. Enzymes were selected on the basis of their importance in sugar metabolism and in linking primary metabolism to lignin biosynthesis. Existing enzyme assays were adapted to allow measurements from ~1 mm3 sections of dissected stem tissue. These experiments provided high spatial resolution of enzyme activity changes across different stages of wood development, and identified the gene transcripts probably responsible for these changes. In most cases, there was a clear positive relationship between transcripts and enzyme activity. During secondary cell wall formation, the increases in transcript levels and enzyme activities also matched with increased levels of glucose, fructose, hexose phosphates, and UDP-glucose, emphasizing an important role for transcriptional regulation in carbon allocation to developing aspen wood. These observations corroborate the efforts to increase carbon allocation to wood by engineering gene regulatory networks.</AbstractText>
<CopyrightInformation>© The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Roach</LastName>
<ForeName>Melissa</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Arrivault</LastName>
<ForeName>Stéphanie</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, Germany.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Mahboubi</LastName>
<ForeName>Amir</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.</Affiliation>
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<Author ValidYN="Y"><LastName>Krohn</LastName>
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<Initials>N</Initials>
<AffiliationInfo><Affiliation>Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, Germany.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Sulpice</LastName>
<ForeName>Ronan</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, Germany.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Plant Systems Biology Laboratory, Plant AgriBiosciences Research Centre, School of Natural Science, Galway, Ireland.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stitt</LastName>
<ForeName>Mark</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Max Planck Institute for Molecular Plant Physiology, Potsdam-Golm, Germany.</Affiliation>
</AffiliationInfo>
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<ForeName>Totte</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.</Affiliation>
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<CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>J Exp Bot. 2018 Jul 18;69(16):4143-4144</RefSource>
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<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
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<MeshHeading><DescriptorName UI="D002244" MajorTopicYN="N">Carbon</DescriptorName>
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<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D052585" MajorTopicYN="N">Phloem</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014158" MajorTopicYN="Y">Transcription, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName>
<QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
</MeshHeading>
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Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

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